J5_6PCT_001

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6PCT|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCT_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.065

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PCT|1|I|C|47
6PCT|1|I|G|48
6PCT|1|I|A|49
6PCT|1|I|U|50
6PCT|1|I|G|51
6PCT|1|I|A|52
6PCT|1|I|A|53
6PCT|1|I|G|54
*
6PCT|1|I|C|116
6PCT|1|I|G|117
6PCT|1|I|A|118
6PCT|1|I|A|119
6PCT|1|I|U|120
6PCT|1|I|G|121
*
6PCT|1|I|C|130
6PCT|1|I|A|131
*
6PCT|1|I|U|148
6PCT|1|I|A|149
6PCT|1|I|U|150
*
6PCT|1|I|A|176
6PCT|1|I|G|177
6PCT|1|I|G|178

Current chains

Chain I

23S ribosomal RNA

Nearby chains