J5_6PJ6_001

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6PJ6|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PJ6_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0581

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PJ6|1|I|C|47
6PJ6|1|I|G|48
6PJ6|1|I|A|49
6PJ6|1|I|U|50
6PJ6|1|I|G|51
6PJ6|1|I|A|52
6PJ6|1|I|A|53
6PJ6|1|I|G|54
*
6PJ6|1|I|C|116
6PJ6|1|I|G|117
6PJ6|1|I|A|118
6PJ6|1|I|A|119
6PJ6|1|I|U|120
6PJ6|1|I|G|121
*
6PJ6|1|I|C|130
6PJ6|1|I|A|131
*
6PJ6|1|I|U|148
6PJ6|1|I|A|149
6PJ6|1|I|U|150
*
6PJ6|1|I|A|176
6PJ6|1|I|G|177
6PJ6|1|I|G|178

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34