J5_6PPF_001

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAGG*CCGAAUG*CA*UAUC*GAAG

Length

26 nucleotides

Bulged bases

6PPF|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|C|47
6PPF|1|A|G|48
6PPF|1|A|A|49
6PPF|1|A|U|50
6PPF|1|A|G|51
6PPF|1|A|A|52
6PPF|1|A|A|53
6PPF|1|A|G|54
6PPF|1|A|G|55
*
6PPF|1|A|C|114
6PPF|1|A|C|115
6PPF|1|A|G|116
6PPF|1|A|A|117
6PPF|1|A|A|118
6PPF|1|A|U|119
6PPF|1|A|G|120
*
6PPF|1|A|C|129
6PPF|1|A|A|130
*
6PPF|1|A|U|149
6PPF|1|A|A|150
6PPF|1|A|U|151
6PPF|1|A|C|152
*
6PPF|1|A|G|177
6PPF|1|A|A|178
6PPF|1|A|A|179
6PPF|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34