J5_6Q9A_005
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 6Q9A|1|1|A|2062, 6Q9A|1|1|A|2448, 6Q9A|1|1|U|2449, 6Q9A|1|1|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q9A|1|1|G|2057
6Q9A|1|1|A|2058
6Q9A|1|1|A|2059
6Q9A|1|1|A|2060
6Q9A|1|1|G|2061
6Q9A|1|1|A|2062
6Q9A|1|1|C|2063
6Q9A|1|1|C|2064
*
6Q9A|1|1|G|2446
6Q9A|1|1|G|2447
6Q9A|1|1|A|2448
6Q9A|1|1|U|2449
6Q9A|1|1|A|2450
6Q9A|1|1|A|2451
6Q9A|1|1|C|2452
6Q9A|1|1|A|2453
*
6Q9A|1|1|U|2500
6Q9A|1|1|C|2501
6Q9A|1|1|G|2502
6Q9A|1|1|2MA|2503
6Q9A|1|1|PSU|2504
6Q9A|1|1|G|2505
6Q9A|1|1|U|2506
6Q9A|1|1|C|2507
*
6Q9A|1|1|G|2582
6Q9A|1|1|G|2583
6Q9A|1|1|U|2584
6Q9A|1|1|U|2585
6Q9A|1|1|U|2586
6Q9A|1|1|A|2587
6Q9A|1|1|G|2588
*
6Q9A|1|1|C|2606
6Q9A|1|1|G|2607
6Q9A|1|1|G|2608
6Q9A|1|1|U|2609
6Q9A|1|1|C|2610
6Q9A|1|1|C|2611
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain 7
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L3
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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