Loop J5_6Q9A

3D structure

PDB id: 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: GCC*GUAAAAAGCCGCAAAAAAUAGUCGCAAACGACGAAAACUACGCUUUAGCAGCUUAAUAACCUGCUUAGAGCCC*GGUCAAACCCAAAAGAGAUCGC*GUUAAAACUUAAUCAGGCUAGU*GCGAAUGUAAAGACUGACUAAGC
Length: 143 nucleotides
Bulged bases: 6Q9A|1|4|A|72, 6Q9A|1|4|A|83, 6Q9A|1|4|A|84, 6Q9A|1|4|U|85, 6Q9A|1|4|A|86, 6Q9A|1|4|C|89, 6Q9A|1|4|G|96, 6Q9A|1|4|A|97, 6Q9A|1|4|C|98, 6Q9A|1|4|G|99, 6Q9A|1|4|A|100, 6Q9A|1|4|A|101, 6Q9A|1|4|C|107, 6Q9A|1|4|U|120, 6Q9A|1|4|U|123, 6Q9A|1|4|C|130, 6Q9A|1|4|U|131, 6Q9A|1|4|C|183, 6Q9A|1|4|A|233, 6Q9A|1|4|U|237, 6Q9A|1|4|A|238, 6Q9A|1|4|A|247, 6Q9A|1|4|U|287, 6Q9A|1|4|A|290, 6Q9A|1|4|A|291, 6Q9A|1|4|A|292, 6Q9A|1|4|U|300, 6Q9A|1|4|A|301, 6Q9A|1|4|A|302
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Q9A|1|4|G|47
6Q9A|1|4|C|48
6Q9A|1|4|C|49
*
6Q9A|1|4|G|67
6Q9A|1|4|U|68
6Q9A|1|4|A|69
6Q9A|1|4|A|70
6Q9A|1|4|A|71
6Q9A|1|4|A|72
6Q9A|1|4|A|73
6Q9A|1|4|G|74
6Q9A|1|4|C|75
6Q9A|1|4|C|76
6Q9A|1|4|G|77
6Q9A|1|4|C|78
6Q9A|1|4|A|79
6Q9A|1|4|A|80
6Q9A|1|4|A|81
6Q9A|1|4|A|82
6Q9A|1|4|A|83
6Q9A|1|4|A|84
6Q9A|1|4|U|85
6Q9A|1|4|A|86
6Q9A|1|4|G|87
6Q9A|1|4|U|88
6Q9A|1|4|C|89
6Q9A|1|4|G|90
6Q9A|1|4|C|91
6Q9A|1|4|A|92
6Q9A|1|4|A|93
6Q9A|1|4|A|94
6Q9A|1|4|C|95
6Q9A|1|4|G|96
6Q9A|1|4|A|97
6Q9A|1|4|C|98
6Q9A|1|4|G|99
6Q9A|1|4|A|100
6Q9A|1|4|A|101
6Q9A|1|4|A|102
6Q9A|1|4|A|103
6Q9A|1|4|C|104
6Q9A|1|4|U|105
6Q9A|1|4|A|106
6Q9A|1|4|C|107
6Q9A|1|4|G|108
6Q9A|1|4|C|109
6Q9A|1|4|U|110
6Q9A|1|4|U|111
6Q9A|1|4|U|112
6Q9A|1|4|A|113
6Q9A|1|4|G|114
6Q9A|1|4|C|115
6Q9A|1|4|A|116
6Q9A|1|4|G|117
6Q9A|1|4|C|118
6Q9A|1|4|U|119
6Q9A|1|4|U|120
6Q9A|1|4|A|121
6Q9A|1|4|A|122
6Q9A|1|4|U|123
6Q9A|1|4|A|124
6Q9A|1|4|A|125
6Q9A|1|4|C|126
6Q9A|1|4|C|127
6Q9A|1|4|U|128
6Q9A|1|4|G|129
6Q9A|1|4|C|130
6Q9A|1|4|U|131
6Q9A|1|4|U|132
6Q9A|1|4|A|133
6Q9A|1|4|G|134
6Q9A|1|4|A|135
6Q9A|1|4|G|136
6Q9A|1|4|C|137
6Q9A|1|4|C|138
6Q9A|1|4|C|139
*
6Q9A|1|4|G|180
6Q9A|1|4|G|181
6Q9A|1|4|U|182
6Q9A|1|4|C|183
6Q9A|1|4|A|184
6Q9A|1|4|A|185
6Q9A|1|4|A|186
6Q9A|1|4|C|187
6Q9A|1|4|C|188
6Q9A|1|4|C|189
6Q9A|1|4|A|190
6Q9A|1|4|A|191
6Q9A|1|4|A|192
6Q9A|1|4|A|193
6Q9A|1|4|G|194
6Q9A|1|4|A|195
6Q9A|1|4|G|196
6Q9A|1|4|A|197
6Q9A|1|4|U|198
6Q9A|1|4|C|199
6Q9A|1|4|G|200
6Q9A|1|4|C|201
*
6Q9A|1|4|G|228
6Q9A|1|4|U|229
6Q9A|1|4|U|230
6Q9A|1|4|A|231
6Q9A|1|4|A|232
6Q9A|1|4|A|233
6Q9A|1|4|A|234
6Q9A|1|4|C|235
6Q9A|1|4|U|236
6Q9A|1|4|U|237
6Q9A|1|4|A|238
6Q9A|1|4|A|239
6Q9A|1|4|U|240
6Q9A|1|4|C|241
6Q9A|1|4|A|242
6Q9A|1|4|G|243
6Q9A|1|4|G|244
6Q9A|1|4|C|245
6Q9A|1|4|U|246
6Q9A|1|4|A|247
6Q9A|1|4|G|248
6Q9A|1|4|U|249
*
6Q9A|1|4|G|282
6Q9A|1|4|C|283
6Q9A|1|4|G|284
6Q9A|1|4|A|285
6Q9A|1|4|A|286
6Q9A|1|4|U|287
6Q9A|1|4|G|288
6Q9A|1|4|U|289
6Q9A|1|4|A|290
6Q9A|1|4|A|291
6Q9A|1|4|A|292
6Q9A|1|4|G|293
6Q9A|1|4|A|294
6Q9A|1|4|C|295
6Q9A|1|4|U|296
6Q9A|1|4|G|297
6Q9A|1|4|A|298
6Q9A|1|4|C|299
6Q9A|1|4|U|300
6Q9A|1|4|A|301
6Q9A|1|4|A|302
6Q9A|1|4|G|303
6Q9A|1|4|C|304

Current chains

Chain 4: tmRNA

Nearby chains

Chain 2: Small subunit ribosomal RNA; SSU rRNA
Chain 5: SsrA-binding protein
Chain 7: Transfer RNA; tRNA
Chain g: 30S ribosomal protein S2
Chain h: 30S ribosomal protein S3
Chain i: 30S ribosomal protein S4
Chain j: 30S ribosomal protein S5
Chain l: 30S ribosomal protein S7
Chain o: 30S ribosomal protein S10
Chain p: 30S ribosomal protein S11
Chain q: 30S ribosomal protein S12
Chain w: 30S ribosomal protein S18
Chain z: 30S ribosomal protein S21

J5_6Q9A_010