J5_6QNQ_004

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6QNQ|1|14|U|271|||C, 6QNQ|1|14|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|14|C|268
6QNQ|1|14|U|269
6QNQ|1|14|A|270
6QNQ|1|14|A|270|||A
6QNQ|1|14|A|270|||B
6QNQ|1|14|C|270|||C
*
6QNQ|1|14|G|270|||W
6QNQ|1|14|G|270|||X
6QNQ|1|14|G|270|||Y
6QNQ|1|14|U|270|||Z
6QNQ|1|14|C|271|||A
6QNQ|1|14|G|271|||B
6QNQ|1|14|U|271|||C
6QNQ|1|14|G|271
*
6QNQ|1|14|C|366
6QNQ|1|14|G|370
6QNQ|1|14|A|371
6QNQ|1|14|G|372
6QNQ|1|14|U|373
6QNQ|1|14|A|374
6QNQ|1|14|C|375
*
6QNQ|1|14|G|399
6QNQ|1|14|G|400
6QNQ|1|14|A|401
6QNQ|1|14|A|402
6QNQ|1|14|U|403
6QNQ|1|14|C|404
6QNQ|1|14|U|405
6QNQ|1|14|G|406
*
6QNQ|1|14|U|421
6QNQ|1|14|A|422
6QNQ|1|14|A|423
6QNQ|1|14|G|424

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 69

50S ribosomal protein L9

Chain F5

50S ribosomal protein L28