J5_6QUL_001

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6QUL|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6QUL_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0822

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6QUL|1|A|C|47
6QUL|1|A|G|48
6QUL|1|A|A|49
6QUL|1|A|U|50
6QUL|1|A|G|51
6QUL|1|A|A|52
6QUL|1|A|A|53
6QUL|1|A|G|54
*
6QUL|1|A|C|116
6QUL|1|A|G|117
6QUL|1|A|A|118
6QUL|1|A|A|119
6QUL|1|A|U|120
6QUL|1|A|G|121
*
6QUL|1|A|C|130
6QUL|1|A|A|131
*
6QUL|1|A|U|148
6QUL|1|A|A|149
6QUL|1|A|U|150
*
6QUL|1|A|A|176
6QUL|1|A|G|177
6QUL|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34