3D structure

PDB id
6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution cryo-EM structure of the human 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
6QZP|1|L5|G|3620, 6QZP|1|L5|G|3625
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6QZP_003 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.111
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6QZP|1|L5|G|2855
6QZP|1|L5|C|2856
6QZP|1|L5|A|2857
6QZP|1|L5|A|2858
6QZP|1|L5|G|2859
6QZP|1|L5|C|2860
6QZP|1|L5|OMC|2861
6QZP|1|L5|G|2862
6QZP|1|L5|G|2863
*
6QZP|1|L5|U|2887
6QZP|1|L5|G|2888
*
6QZP|1|L5|U|3613
6QZP|1|L5|G|3614
*
6QZP|1|L5|C|3618
6QZP|1|L5|G|3619
6QZP|1|L5|G|3620
6QZP|1|L5|A|3621
6QZP|1|L5|C|3622
6QZP|1|L5|C|3623
6QZP|1|L5|A|3624
6QZP|1|L5|G|3625
6QZP|1|L5|G|3626
*
6QZP|1|L5|C|3835
6QZP|1|L5|A|3836
6QZP|1|L5|C|3837

Current chains

Chain L5
28S rRNA (3773-MER)

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LR
60S ribosomal protein L19
Chain LV
60S ribosomal protein L23
Chain LW
60S ribosomal protein L24
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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