J5_6QZP_004
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*GG(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6QZP|1|L5|A|3908, 6QZP|1|L5|A|4394, 6QZP|1|L5|PSU|4450, 6QZP|1|L5|G|4451, 6QZP|1|L5|U|4452, 6QZP|1|L5|U|4555, 6QZP|1|L5|U|4556
- QA status
- Modified nucleotides: OMC, 5MC, PSU, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QZP|1|L5|A|3903
6QZP|1|L5|G|3904
6QZP|1|L5|A|3905
6QZP|1|L5|A|3906
6QZP|1|L5|G|3907
6QZP|1|L5|A|3908
6QZP|1|L5|OMC|3909
6QZP|1|L5|C|3910
*
6QZP|1|L5|G|4392
6QZP|1|L5|G|4393
6QZP|1|L5|A|4394
6QZP|1|L5|U|4395
6QZP|1|L5|A|4396
6QZP|1|L5|A|4397
6QZP|1|L5|C|4398
6QZP|1|L5|U|4399
6QZP|1|L5|G|4400
*
6QZP|1|L5|C|4444
6QZP|1|L5|U|4445
6QZP|1|L5|U|4446
6QZP|1|L5|5MC|4447
6QZP|1|L5|G|4448
6QZP|1|L5|A|4449
6QZP|1|L5|PSU|4450
6QZP|1|L5|G|4451
6QZP|1|L5|U|4452
6QZP|1|L5|C|4453
*
6QZP|1|L5|G|4528
6QZP|1|L5|G|4529
6QZP|1|L5|UR3|4530
6QZP|1|L5|PSU|4531
6QZP|1|L5|U|4532
6QZP|1|L5|A|4533
6QZP|1|L5|G|4534
*
6QZP|1|L5|U|4552
6QZP|1|L5|A|4553
6QZP|1|L5|G|4554
6QZP|1|L5|U|4555
6QZP|1|L5|U|4556
6QZP|1|L5|U|4557
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain LI
- 60S ribosomal protein L10-like
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
Coloring options: