J5_6QZP_009

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGCUC*GGG*UG*CCG*CGA

Length

17 nucleotides

Bulged bases

6QZP|1|S2|G|126, 6QZP|1|S2|C|127

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|S2|U|124
6QZP|1|S2|C|125
6QZP|1|S2|G|126
6QZP|1|S2|C|127
6QZP|1|S2|U|128
6QZP|1|S2|C|129
*
6QZP|1|S2|G|183
6QZP|1|S2|G|184
6QZP|1|S2|G|185
*
6QZP|1|S2|U|214
6QZP|1|S2|G|215
*
6QZP|1|S2|C|310
6QZP|1|S2|C|311
6QZP|1|S2|G|312
*
6QZP|1|S2|C|337
6QZP|1|S2|G|338
6QZP|1|S2|A|339

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6