J5_6R5Q_007

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|K|C|30
6R5Q|1|K|U|31
6R5Q|1|K|U|32
6R5Q|1|K|G|33
6R5Q|1|K|U|34
*
6R5Q|1|K|A|521
6R5Q|1|K|A|522
6R5Q|1|K|A|523
6R5Q|1|K|U|524
6R5Q|1|K|A|525
6R5Q|1|K|A|526
6R5Q|1|K|C|527
*
6R5Q|1|K|G|558
6R5Q|1|K|G|559
6R5Q|1|K|A|560
6R5Q|1|K|A|561
6R5Q|1|K|U|562
6R5Q|1|K|G|563
6R5Q|1|K|A|564
6R5Q|1|K|G|565
*
6R5Q|1|K|C|585
6R5Q|1|K|G|586
6R5Q|1|K|A|587
6R5Q|1|K|G|588
6R5Q|1|K|G|589
6R5Q|1|K|A|590
6R5Q|1|K|U|591
6R5Q|1|K|C|592
6R5Q|1|K|C|593
6R5Q|1|K|A|594
6R5Q|1|K|U|595
*
6R5Q|1|K|A|641
6R5Q|1|K|U|642
6R5Q|1|K|A|643
6R5Q|1|K|G|644

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain DD

Ribosomal protein S9 (Predicted)

Chain VV

Ribosomal protein S23