J5_6R5Q_009

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6R5Q|1|K|G|126, 6R5Q|1|K|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|K|G|123
6R5Q|1|K|U|124
6R5Q|1|K|C|125
6R5Q|1|K|G|126
6R5Q|1|K|C|127
6R5Q|1|K|U|128
6R5Q|1|K|C|129
*
6R5Q|1|K|G|183
6R5Q|1|K|G|184
6R5Q|1|K|G|185
*
6R5Q|1|K|U|214
6R5Q|1|K|G|215
*
6R5Q|1|K|C|310
6R5Q|1|K|C|311
6R5Q|1|K|G|312
*
6R5Q|1|K|C|337
6R5Q|1|K|G|338
6R5Q|1|K|A|339
6R5Q|1|K|C|340
6R5Q|1|K|C|341

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain x

40S ribosomal protein S4

Chain z

40S ribosomal protein S6