J5_6R6G_003
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6R6G|1|5|G|2318, 6R6G|1|5|G|2323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6R6G_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1396
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|G|2248
6R6G|1|5|C|2249
6R6G|1|5|A|2250
6R6G|1|5|A|2251
6R6G|1|5|G|2252
6R6G|1|5|C|2253
6R6G|1|5|C|2254
6R6G|1|5|G|2255
6R6G|1|5|G|2256
*
6R6G|1|5|U|2280
6R6G|1|5|G|2281
*
6R6G|1|5|U|2311
6R6G|1|5|G|2312
*
6R6G|1|5|C|2316
6R6G|1|5|G|2317
6R6G|1|5|G|2318
6R6G|1|5|A|2319
6R6G|1|5|C|2320
6R6G|1|5|C|2321
6R6G|1|5|A|2322
6R6G|1|5|G|2323
6R6G|1|5|G|2324
*
6R6G|1|5|C|2533
6R6G|1|5|A|2534
6R6G|1|5|C|2535
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- 60S ribosomal protein L19
- Chain V
- eL14
- Chain W
- Ribosomal protein L24
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