J5_6R6G_004

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAAGACCC*GGGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

42 nucleotides

Bulged bases

6R6G|1|5|A|2606, 6R6G|1|5|A|2964, 6R6G|1|5|U|2965, 6R6G|1|5|U|3125, 6R6G|1|5|U|3126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|A|2601
6R6G|1|5|G|2602
6R6G|1|5|A|2603
6R6G|1|5|A|2604
6R6G|1|5|G|2605
6R6G|1|5|A|2606
6R6G|1|5|C|2607
6R6G|1|5|C|2608
6R6G|1|5|C|2609
*
6R6G|1|5|G|2961
6R6G|1|5|G|2962
6R6G|1|5|G|2963
6R6G|1|5|A|2964
6R6G|1|5|U|2965
6R6G|1|5|A|2966
6R6G|1|5|A|2967
6R6G|1|5|C|2968
6R6G|1|5|U|2969
6R6G|1|5|G|2970
*
6R6G|1|5|C|3014
6R6G|1|5|U|3015
6R6G|1|5|U|3016
6R6G|1|5|C|3017
6R6G|1|5|G|3018
6R6G|1|5|A|3019
6R6G|1|5|U|3020
6R6G|1|5|G|3021
6R6G|1|5|U|3022
6R6G|1|5|C|3023
*
6R6G|1|5|G|3098
6R6G|1|5|G|3099
6R6G|1|5|U|3100
6R6G|1|5|U|3101
6R6G|1|5|U|3102
6R6G|1|5|A|3103
6R6G|1|5|G|3104
*
6R6G|1|5|U|3122
6R6G|1|5|A|3123
6R6G|1|5|G|3124
6R6G|1|5|U|3125
6R6G|1|5|U|3126
6R6G|1|5|U|3127

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

X-box-binding protein 1

Chain 2

Transfer RNA; tRNA

Chain A

uL2

Chain B

uL3

Chain C

uL4

Chain a

uL15

Chain b

eL29