J5_6R6G_009

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCGCUC*GGG*UGCAUU*ACCUCGGGCCG*CGACC

Length

32 nucleotides

Bulged bases

6R6G|1|K|G|126, 6R6G|1|K|C|127, 6R6G|1|K|U|305, 6R6G|1|K|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|K|G|123
6R6G|1|K|U|124
6R6G|1|K|C|125
6R6G|1|K|G|126
6R6G|1|K|C|127
6R6G|1|K|U|128
6R6G|1|K|C|129
*
6R6G|1|K|G|183
6R6G|1|K|G|184
6R6G|1|K|G|185
*
6R6G|1|K|U|214
6R6G|1|K|G|215
6R6G|1|K|C|216
6R6G|1|K|A|217
6R6G|1|K|U|218
6R6G|1|K|U|219
*
6R6G|1|K|A|302
6R6G|1|K|C|303
6R6G|1|K|C|304
6R6G|1|K|U|305
6R6G|1|K|C|306
6R6G|1|K|G|307
6R6G|1|K|G|308
6R6G|1|K|G|309
6R6G|1|K|C|310
6R6G|1|K|C|311
6R6G|1|K|G|312
*
6R6G|1|K|C|337
6R6G|1|K|G|338
6R6G|1|K|A|339
6R6G|1|K|C|340
6R6G|1|K|C|341

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain x

40S ribosomal protein S4

Chain z

40S ribosomal protein S6