J5_6R6G_011
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6R6G|1|5|A|2606, 6R6G|1|5|A|2964, 6R6G|1|5|U|2965, 6R6G|1|5|U|3125, 6R6G|1|5|U|3126
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|A|2601
6R6G|1|5|G|2602
6R6G|1|5|A|2603
6R6G|1|5|A|2604
6R6G|1|5|G|2605
6R6G|1|5|A|2606
6R6G|1|5|C|2607
6R6G|1|5|C|2608
*
6R6G|1|5|G|2962
6R6G|1|5|G|2963
6R6G|1|5|A|2964
6R6G|1|5|U|2965
6R6G|1|5|A|2966
6R6G|1|5|A|2967
6R6G|1|5|C|2968
6R6G|1|5|U|2969
6R6G|1|5|G|2970
*
6R6G|1|5|C|3014
6R6G|1|5|U|3015
6R6G|1|5|U|3016
6R6G|1|5|C|3017
6R6G|1|5|G|3018
6R6G|1|5|A|3019
6R6G|1|5|U|3020
6R6G|1|5|G|3021
6R6G|1|5|U|3022
6R6G|1|5|C|3023
*
6R6G|1|5|G|3098
6R6G|1|5|G|3099
6R6G|1|5|U|3100
6R6G|1|5|U|3101
6R6G|1|5|U|3102
6R6G|1|5|A|3103
6R6G|1|5|G|3104
*
6R6G|1|5|U|3122
6R6G|1|5|A|3123
6R6G|1|5|G|3124
6R6G|1|5|U|3125
6R6G|1|5|U|3126
6R6G|1|5|U|3127
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- X-box-binding protein 1
- Chain 2
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- uL4
- Chain a
- uL15
- Chain b
- eL29
Coloring options: