J5_6R6P_003
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6R6P|1|5|G|3620, 6R6P|1|5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6R6P_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1317
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6P|1|5|G|2855
6R6P|1|5|C|2856
6R6P|1|5|A|2857
6R6P|1|5|A|2858
6R6P|1|5|G|2859
6R6P|1|5|C|2860
6R6P|1|5|C|2861
6R6P|1|5|G|2862
6R6P|1|5|G|2863
*
6R6P|1|5|U|2887
6R6P|1|5|G|2888
*
6R6P|1|5|U|3613
6R6P|1|5|G|3614
*
6R6P|1|5|C|3618
6R6P|1|5|G|3619
6R6P|1|5|G|3620
6R6P|1|5|A|3621
6R6P|1|5|C|3622
6R6P|1|5|C|3623
6R6P|1|5|A|3624
6R6P|1|5|G|3625
6R6P|1|5|G|3626
*
6R6P|1|5|C|3835
6R6P|1|5|A|3836
6R6P|1|5|C|3837
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain CC
- 40S ribosomal protein S8
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- eL19
- Chain V
- uL14
- Chain W
- Ribosomal protein L24
Coloring options: