J5_6R6P_009

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6R6P|1|K|G|126, 6R6P|1|K|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|K|G|123
6R6P|1|K|U|124
6R6P|1|K|C|125
6R6P|1|K|G|126
6R6P|1|K|C|127
6R6P|1|K|U|128
6R6P|1|K|C|129
*
6R6P|1|K|G|183
6R6P|1|K|G|184
6R6P|1|K|G|185
*
6R6P|1|K|U|214
6R6P|1|K|G|215
*
6R6P|1|K|C|310
6R6P|1|K|C|311
6R6P|1|K|G|312
*
6R6P|1|K|C|337
6R6P|1|K|G|338
6R6P|1|K|A|339
6R6P|1|K|C|340
6R6P|1|K|C|341

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain x

40S ribosomal protein S4

Chain z

40S ribosomal protein S6