J5_6R7Q_005
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6R7Q|1|5|G|3922, 6R7Q|1|5|A|4376, 6R7Q|1|5|G|4377, 6R7Q|1|5|A|4378, 6R7Q|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6R7Q_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3241
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6R7Q|1|5|U|3920
6R7Q|1|5|U|3921
6R7Q|1|5|G|3922
6R7Q|1|5|A|3923
*
6R7Q|1|5|U|4188
6R7Q|1|5|U|4189
6R7Q|1|5|U|4190
6R7Q|1|5|G|4191
*
6R7Q|1|5|C|4204
6R7Q|1|5|A|4205
*
6R7Q|1|5|U|4227
6R7Q|1|5|G|4228
*
6R7Q|1|5|C|4375
6R7Q|1|5|A|4376
6R7Q|1|5|G|4377
6R7Q|1|5|A|4378
6R7Q|1|5|A|4379
6R7Q|1|5|A|4380
6R7Q|1|5|A|4381
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain o
- eL42
Coloring options: