J5_6R7Q_010
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 6R7Q|1|K|C|687, 6R7Q|1|K|U|871, 6R7Q|1|K|G|873, 6R7Q|1|K|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R7Q|1|K|A|685
6R7Q|1|K|U|686
6R7Q|1|K|C|687
6R7Q|1|K|U|688
6R7Q|1|K|U|689
6R7Q|1|K|G|690
*
6R7Q|1|K|C|736
6R7Q|1|K|U|743
6R7Q|1|K|G|744
*
6R7Q|1|K|C|797
6R7Q|1|K|G|798
6R7Q|1|K|U|799
6R7Q|1|K|U|800
*
6R7Q|1|K|A|865
6R7Q|1|K|U|866
6R7Q|1|K|G|867
6R7Q|1|K|G|868
6R7Q|1|K|A|869
6R7Q|1|K|A|870
6R7Q|1|K|U|871
6R7Q|1|K|A|872
6R7Q|1|K|G|873
6R7Q|1|K|G|874
*
6R7Q|1|K|C|912
6R7Q|1|K|A|913
6R7Q|1|K|U|914
6R7Q|1|K|G|915
6R7Q|1|K|A|916
6R7Q|1|K|U|917
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain BB
- 40S ribosomal protein S7
- Chain EE
- Ribosomal protein S11
- Chain QQ
- ribosomal protein uS15
- Chain R
- eL19
- Chain TT
- Ribosomal protein S15a
- Chain VV
- Ribosomal protein S23
- Chain x
- 40S ribosomal protein S4
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