J5_6R84_005
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6R84|1|1|A|2404, 6R84|1|1|A|2817, 6R84|1|1|U|2875, 6R84|1|1|U|2954, 6R84|1|1|U|2978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R84|1|1|A|2399
6R84|1|1|G|2400
6R84|1|1|A|2401
6R84|1|1|A|2402
6R84|1|1|G|2403
6R84|1|1|A|2404
6R84|1|1|C|2405
6R84|1|1|C|2406
*
6R84|1|1|G|2815
6R84|1|1|G|2816
6R84|1|1|A|2817
6R84|1|1|U|2818
6R84|1|1|A|2819
6R84|1|1|A|2820
6R84|1|1|C|2821
6R84|1|1|U|2822
6R84|1|1|G|2823
*
6R84|1|1|C|2867
6R84|1|1|U|2868
6R84|1|1|U|2869
6R84|1|1|C|2870
6R84|1|1|G|2871
6R84|1|1|A|2872
6R84|1|1|U|2873
6R84|1|1|G|2874
6R84|1|1|U|2875
6R84|1|1|C|2876
*
6R84|1|1|G|2951
6R84|1|1|G|2952
6R84|1|1|U|2953
6R84|1|1|U|2954
6R84|1|1|U|2955
6R84|1|1|A|2956
6R84|1|1|G|2957
*
6R84|1|1|U|2975
6R84|1|1|A|2976
6R84|1|1|G|2977
6R84|1|1|U|2978
6R84|1|1|U|2979
6R84|1|1|U|2980
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 5
- 60S ribosomal protein L17-A
- Chain B
- Transfer RNA; tRNA
- Chain E
- 60S ribosomal protein L2-A
- Chain F
- 60S ribosomal protein L3
- Chain G
- 60S ribosomal protein L4-A
- Chain c
- 60S ribosomal protein L28
- Chain d
- 60S ribosomal protein L29
- Chain s
- 60S ribosomal protein L10
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