J5_6R87_004
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6R87|1|1|G|2116, 6R87|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6R87_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0954
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R87|1|1|G|1906
6R87|1|1|C|1907
6R87|1|1|A|1908
6R87|1|1|A|1909
6R87|1|1|A|1910
6R87|1|1|A|1911
6R87|1|1|U|1912
6R87|1|1|A|1913
6R87|1|1|G|1914
*
6R87|1|1|U|1938
6R87|1|1|G|1939
*
6R87|1|1|U|2109
6R87|1|1|G|2110
*
6R87|1|1|C|2114
6R87|1|1|G|2115
6R87|1|1|G|2116
6R87|1|1|A|2117
6R87|1|1|C|2118
6R87|1|1|A|2119
6R87|1|1|A|2120
6R87|1|1|G|2121
6R87|1|1|G|2122
*
6R87|1|1|C|2331
6R87|1|1|A|2332
6R87|1|1|C|2333
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L3
- Chain T
- 60S ribosomal protein L19-A
- Chain Y
- 60S ribosomal protein L24-A
- Chain x
- 60S ribosomal protein L23-A
Coloring options: