J5_6RBD_001

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAUU*AAUAG

Length

28 nucleotides

Bulged bases

6RBD|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|C|31
6RBD|1|2|U|32
6RBD|1|2|U|33
6RBD|1|2|G|34
6RBD|1|2|U|35
*
6RBD|1|2|A|473
6RBD|1|2|A|474
6RBD|1|2|A|475
6RBD|1|2|U|476
6RBD|1|2|A|477
6RBD|1|2|A|478
6RBD|1|2|C|479
*
6RBD|1|2|G|509
6RBD|1|2|G|510
6RBD|1|2|A|511
6RBD|1|2|A|512
6RBD|1|2|U|513
6RBD|1|2|G|514
*
6RBD|1|2|C|543
6RBD|1|2|A|544
6RBD|1|2|A|545
6RBD|1|2|U|546
6RBD|1|2|U|547
*
6RBD|1|2|A|591
6RBD|1|2|A|592
6RBD|1|2|U|593
6RBD|1|2|A|594
6RBD|1|2|G|595

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A

Chain k

Ribosome biogenesis protein TSR1