J5_6RBD_004

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6RBD|1|2|U|128, 6RBD|1|2|A|140, 6RBD|1|2|U|141, 6RBD|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|A|124
6RBD|1|2|U|125
6RBD|1|2|A|126
6RBD|1|2|G|127
6RBD|1|2|U|128
6RBD|1|2|U|129
6RBD|1|2|C|130
6RBD|1|2|C|131
6RBD|1|2|U|132
6RBD|1|2|U|133
6RBD|1|2|U|134
6RBD|1|2|A|135
6RBD|1|2|C|136
6RBD|1|2|U|137
6RBD|1|2|A|138
6RBD|1|2|C|139
6RBD|1|2|A|140
6RBD|1|2|U|141
6RBD|1|2|G|142
6RBD|1|2|G|143
*
6RBD|1|2|C|172
6RBD|1|2|A|173
6RBD|1|2|U|174
6RBD|1|2|G|175
6RBD|1|2|C|176
6RBD|1|2|U|177
6RBD|1|2|U|178
6RBD|1|2|A|179
6RBD|1|2|A|180
6RBD|1|2|A|181
6RBD|1|2|A|182
*
6RBD|1|2|U|203
6RBD|1|2|G|204
*
6RBD|1|2|C|263
6RBD|1|2|G|264
6RBD|1|2|A|265
*
6RBD|1|2|U|289
6RBD|1|2|G|290
6RBD|1|2|G|291
6RBD|1|2|U|292
6RBD|1|2|U|293

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A