J5_6RBD_007

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

6RBD|1|2|U|639, 6RBD|1|2|U|694, 6RBD|1|2|U|695, 6RBD|1|2|C|696, 6RBD|1|2|U|813, 6RBD|1|2|G|815, 6RBD|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|A|636
6RBD|1|2|C|637
6RBD|1|2|U|638
6RBD|1|2|U|639
6RBD|1|2|U|640
6RBD|1|2|G|641
*
6RBD|1|2|U|693
6RBD|1|2|U|694
6RBD|1|2|U|695
6RBD|1|2|C|696
6RBD|1|2|C|697
6RBD|1|2|U|698
*
6RBD|1|2|A|740
6RBD|1|2|C|741
6RBD|1|2|U|742
6RBD|1|2|U|743
6RBD|1|2|U|744
*
6RBD|1|2|A|807
6RBD|1|2|U|808
6RBD|1|2|A|809
6RBD|1|2|G|810
6RBD|1|2|A|811
6RBD|1|2|A|812
6RBD|1|2|U|813
6RBD|1|2|A|814
6RBD|1|2|G|815
6RBD|1|2|G|816
6RBD|1|2|A|817
*
6RBD|1|2|U|854
6RBD|1|2|A|855
6RBD|1|2|A|856
6RBD|1|2|U|857
6RBD|1|2|G|858
6RBD|1|2|A|859
6RBD|1|2|U|860

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7-A

Chain L

40S ribosomal protein S11-A

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A