J5_6RM3_002
3D structure
- PDB id
- 6RM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAAAUUAG*UG*UU*ACUAUGUAA*UAC
- Length
- 25 nucleotides
- Bulged bases
- 6RM3|1|L50|A|1504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6RM3_002 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.3423
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6RM3|1|L50|G|1441
6RM3|1|L50|C|1442
6RM3|1|L50|A|1443
6RM3|1|L50|A|1444
6RM3|1|L50|A|1445
6RM3|1|L50|U|1446
6RM3|1|L50|U|1447
6RM3|1|L50|A|1448
6RM3|1|L50|G|1449
*
6RM3|1|L50|U|1473
6RM3|1|L50|G|1474
*
6RM3|1|L50|U|1493
6RM3|1|L50|U|1494
*
6RM3|1|L50|A|1497
6RM3|1|L50|C|1498
6RM3|1|L50|U|1499
6RM3|1|L50|A|1500
6RM3|1|L50|U|1501
6RM3|1|L50|G|1502
6RM3|1|L50|U|1503
6RM3|1|L50|A|1504
6RM3|1|L50|A|1505
*
6RM3|1|L50|U|1690
6RM3|1|L50|A|1691
6RM3|1|L50|C|1692
Current chains
- Chain L50
- 23S rRNA
Nearby chains
- Chain LB0
- uL3
- Chain LR0
- eL19
- Chain LV0
- uL14
- Chain LW0
- eL24
- Chain S60
- Small subunit ribosomal RNA; SSU rRNA
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