J5_6RM3_003

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

6RM3|1|L50|A|2086, 6RM3|1|L50|G|2143, 6RM3|1|L50|U|2223, 6RM3|1|L50|U|2247, 6RM3|1|L50|U|2248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RM3|1|L50|A|1760
6RM3|1|L50|G|1761
6RM3|1|L50|A|1762
6RM3|1|L50|A|1763
6RM3|1|L50|G|1764
6RM3|1|L50|A|1765
6RM3|1|L50|C|1766
6RM3|1|L50|C|1767
*
6RM3|1|L50|G|2084
6RM3|1|L50|G|2085
6RM3|1|L50|A|2086
6RM3|1|L50|U|2087
6RM3|1|L50|A|2088
6RM3|1|L50|A|2089
6RM3|1|L50|C|2090
6RM3|1|L50|U|2091
6RM3|1|L50|G|2092
*
6RM3|1|L50|C|2136
6RM3|1|L50|U|2137
6RM3|1|L50|U|2138
6RM3|1|L50|C|2139
6RM3|1|L50|G|2140
6RM3|1|L50|A|2141
6RM3|1|L50|U|2142
6RM3|1|L50|G|2143
6RM3|1|L50|U|2144
6RM3|1|L50|C|2145
*
6RM3|1|L50|G|2220
6RM3|1|L50|G|2221
6RM3|1|L50|U|2222
6RM3|1|L50|U|2223
6RM3|1|L50|U|2224
6RM3|1|L50|A|2225
6RM3|1|L50|G|2226
*
6RM3|1|L50|U|2244
6RM3|1|L50|A|2245
6RM3|1|L50|G|2246
6RM3|1|L50|U|2247
6RM3|1|L50|U|2248
6RM3|1|L50|U|2249

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LB0

uL3

Chain LBB

eL29

Chain LC0

uL4

Chain LNN

MDF2