J5_6RXU_001
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUGCUUGG*CCAGACCUACUUCAAAGCCACCG*CUCUUGG*CUG*UAAAGGAGC
- Length
- 51 nucleotides
- Bulged bases
- 6RXU|1|C1|G|257, 6RXU|1|C1|C|258, 6RXU|1|C1|U|259, 6RXU|1|C1|U|260, 6RXU|1|C1|G|261, 6RXU|1|C1|A|272, 6RXU|1|C1|U|277, 6RXU|1|C1|U|281, 6RXU|1|C1|C|282, 6RXU|1|C1|C|290, 6RXU|1|C1|C|291, 6RXU|1|C1|G|352, 6RXU|1|C1|U|416, 6RXU|1|C2|A|62, 6RXU|1|C2|G|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RXU|1|C1|G|254
6RXU|1|C1|G|255
6RXU|1|C1|U|256
6RXU|1|C1|G|257
6RXU|1|C1|C|258
6RXU|1|C1|U|259
6RXU|1|C1|U|260
6RXU|1|C1|G|261
6RXU|1|C1|G|262
*
6RXU|1|C1|C|270
6RXU|1|C1|C|271
6RXU|1|C1|A|272
6RXU|1|C1|G|273
6RXU|1|C1|A|274
6RXU|1|C1|C|275
6RXU|1|C1|C|276
6RXU|1|C1|U|277
6RXU|1|C1|A|278
6RXU|1|C1|C|279
6RXU|1|C1|U|280
6RXU|1|C1|U|281
6RXU|1|C1|C|282
6RXU|1|C1|A|283
6RXU|1|C1|A|284
6RXU|1|C1|A|285
6RXU|1|C1|G|286
6RXU|1|C1|C|287
6RXU|1|C1|C|288
6RXU|1|C1|A|289
6RXU|1|C1|C|290
6RXU|1|C1|C|291
6RXU|1|C1|G|292
*
6RXU|1|C1|C|347
6RXU|1|C1|U|348
6RXU|1|C1|C|349
6RXU|1|C1|U|350
6RXU|1|C1|U|351
6RXU|1|C1|G|352
6RXU|1|C1|G|353
*
6RXU|1|C1|C|415
6RXU|1|C1|U|416
6RXU|1|C1|G|417
*
6RXU|1|C2|U|56
6RXU|1|C2|A|57
6RXU|1|C2|A|58
6RXU|1|C2|A|59
6RXU|1|C2|G|60
6RXU|1|C2|G|61
6RXU|1|C2|A|62
6RXU|1|C2|G|63
6RXU|1|C2|C|64
Current chains
- Chain C1
- 35S rRNA
- Chain C2
- U3 snoRNA
Nearby chains
- Chain CD
- Nop58
- Chain CI
- Bms1
- Chain CJ
- Imp3
- Chain CK
- Putative U3 small nucleolar ribonucleoprotein
- Chain CL
- Putative U3 small nucleolar ribonucleoprotein protein
- Chain UA
- Periodic tryptophan protein 2-like protein
- Chain UG
- Utp7
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UN
- Utp14
- Chain UR
- Utp18
- Chain UU
- Putative U3 snoRNP protein
- Chain UX
- Utp24
Coloring options: