J5_6RXU_003
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUAGUACCUUACUACAU*AUGCUGAAAA*UG*CGA*UGGUU
- Length
- 37 nucleotides
- Bulged bases
- 6RXU|1|C1|U|718, 6RXU|1|C1|C|721, 6RXU|1|C1|A|725
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RXU|1|C1|A|710
6RXU|1|C1|U|711
6RXU|1|C1|A|712
6RXU|1|C1|G|713
6RXU|1|C1|U|714
6RXU|1|C1|A|715
6RXU|1|C1|C|716
6RXU|1|C1|C|717
6RXU|1|C1|U|718
6RXU|1|C1|U|719
6RXU|1|C1|A|720
6RXU|1|C1|C|721
6RXU|1|C1|U|722
6RXU|1|C1|A|723
6RXU|1|C1|C|724
6RXU|1|C1|A|725
6RXU|1|C1|U|726
*
6RXU|1|C1|A|757
6RXU|1|C1|U|758
6RXU|1|C1|G|759
6RXU|1|C1|C|760
6RXU|1|C1|U|761
6RXU|1|C1|G|762
6RXU|1|C1|A|763
6RXU|1|C1|A|764
6RXU|1|C1|A|765
6RXU|1|C1|A|766
*
6RXU|1|C1|U|785
6RXU|1|C1|G|786
*
6RXU|1|C1|C|847
6RXU|1|C1|G|848
6RXU|1|C1|A|849
*
6RXU|1|C1|U|873
6RXU|1|C1|G|874
6RXU|1|C1|G|875
6RXU|1|C1|U|876
6RXU|1|C1|U|877
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CW
- Ribosome biogenesis protein ENP2
- Chain Cb
- 40S ribosomal protein S4
- Chain Cd
- 40S ribosomal protein S6
- Chain Cf
- 40S ribosomal protein S8
- Chain UT
- Utp20
Coloring options: