J5_6RZZ_001
3D structure
- PDB id
- 6RZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6RZZ|1|y|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6RZZ_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.061
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RZZ|1|A|A|20
6RZZ|1|A|G|21
6RZZ|1|A|G|22
*
6RZZ|1|y|C|35
6RZZ|1|y|G|36
6RZZ|1|y|A|37
6RZZ|1|y|U|38
6RZZ|1|y|G|39
6RZZ|1|y|A|40
6RZZ|1|y|A|41
6RZZ|1|y|G|42
*
6RZZ|1|y|U|102
6RZZ|1|y|G|103
6RZZ|1|y|A|104
6RZZ|1|y|A|105
6RZZ|1|y|C|106
6RZZ|1|y|G|107
*
6RZZ|1|y|C|115
6RZZ|1|y|G|116
*
6RZZ|1|y|C|137
6RZZ|1|y|A|138
6RZZ|1|y|U|139
Current chains
- Chain A
- 25S ribosomal RNA
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain O
- 60S ribosomal protein L15-A
- Chain W
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
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