J5_6S0K_001

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6S0K|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6S0K_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0618

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6S0K|1|A|C|47
6S0K|1|A|G|48
6S0K|1|A|A|49
6S0K|1|A|U|50
6S0K|1|A|G|51
6S0K|1|A|A|52
6S0K|1|A|A|53
6S0K|1|A|G|54
*
6S0K|1|A|C|116
6S0K|1|A|G|117
6S0K|1|A|A|118
6S0K|1|A|A|119
6S0K|1|A|U|120
6S0K|1|A|G|121
*
6S0K|1|A|C|130
6S0K|1|A|A|131
*
6S0K|1|A|U|148
6S0K|1|A|A|149
6S0K|1|A|U|150
*
6S0K|1|A|A|176
6S0K|1|A|G|177
6S0K|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34