J5_6S0K_005

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

6S0K|1|A|A|2062, 6S0K|1|A|A|2448, 6S0K|1|A|U|2449, 6S0K|1|A|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0K|1|A|G|2057
6S0K|1|A|A|2058
6S0K|1|A|A|2059
6S0K|1|A|A|2060
6S0K|1|A|G|2061
6S0K|1|A|A|2062
6S0K|1|A|C|2063
6S0K|1|A|C|2064
*
6S0K|1|A|G|2446
6S0K|1|A|G|2447
6S0K|1|A|A|2448
6S0K|1|A|U|2449
6S0K|1|A|A|2450
6S0K|1|A|A|2451
6S0K|1|A|C|2452
6S0K|1|A|A|2453
*
6S0K|1|A|U|2500
6S0K|1|A|C|2501
6S0K|1|A|G|2502
6S0K|1|A|A|2503
6S0K|1|A|U|2504
6S0K|1|A|G|2505
6S0K|1|A|U|2506
*
6S0K|1|A|G|2583
6S0K|1|A|U|2584
6S0K|1|A|U|2585
6S0K|1|A|U|2586
6S0K|1|A|A|2587
6S0K|1|A|G|2588
*
6S0K|1|A|C|2606
6S0K|1|A|G|2607
6S0K|1|A|G|2608
6S0K|1|A|U|2609
6S0K|1|A|C|2610
6S0K|1|A|C|2611

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

tRNA-CCA

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32

Chain k

Cytoskeleton protein RodZ