J5_6S47_001
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6S47|1|AC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6S47_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0646
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S47|1|AA|A|20
6S47|1|AA|G|21
6S47|1|AA|G|22
*
6S47|1|AC|C|35
6S47|1|AC|G|36
6S47|1|AC|A|37
6S47|1|AC|U|38
6S47|1|AC|G|39
6S47|1|AC|A|40
6S47|1|AC|A|41
6S47|1|AC|G|42
*
6S47|1|AC|U|102
6S47|1|AC|G|103
6S47|1|AC|A|104
6S47|1|AC|A|105
6S47|1|AC|C|106
6S47|1|AC|G|107
*
6S47|1|AC|C|115
6S47|1|AC|G|116
*
6S47|1|AC|C|137
6S47|1|AC|A|138
6S47|1|AC|U|139
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AP
- 60S ribosomal protein L15-A
- Chain AZ
- 60S ribosomal protein L25
- Chain Aj
- 60S ribosomal protein L35-A
- Chain Al
- 60S ribosomal protein L37-A
- Chain An
- 60S ribosomal protein L39
Coloring options: