J5_6S47_005
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU
- Length
- 38 nucleotides
- Bulged bases
- 6S47|1|AA|A|2817, 6S47|1|AA|G|2874, 6S47|1|AA|U|2978, 6S47|1|AA|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S47|1|AA|A|2399
6S47|1|AA|G|2400
6S47|1|AA|A|2401
6S47|1|AA|A|2402
6S47|1|AA|G|2403
6S47|1|AA|A|2404
6S47|1|AA|C|2405
6S47|1|AA|C|2406
*
6S47|1|AA|G|2815
6S47|1|AA|G|2816
6S47|1|AA|A|2817
6S47|1|AA|U|2818
6S47|1|AA|A|2819
6S47|1|AA|A|2820
6S47|1|AA|C|2821
6S47|1|AA|U|2822
6S47|1|AA|G|2823
*
6S47|1|AA|C|2867
6S47|1|AA|U|2868
6S47|1|AA|U|2869
6S47|1|AA|C|2870
6S47|1|AA|G|2871
6S47|1|AA|A|2872
6S47|1|AA|U|2873
6S47|1|AA|G|2874
6S47|1|AA|U|2875
*
6S47|1|AA|G|2952
6S47|1|AA|U|2953
6S47|1|AA|U|2954
6S47|1|AA|U|2955
6S47|1|AA|A|2956
6S47|1|AA|G|2957
*
6S47|1|AA|U|2975
6S47|1|AA|A|2976
6S47|1|AA|G|2977
6S47|1|AA|U|2978
6S47|1|AA|U|2979
6S47|1|AA|U|2980
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2-A
- Chain AE
- 60S ribosomal protein L3
- Chain AF
- 60S ribosomal protein L4-A
- Chain AR
- 60S ribosomal protein L17-A
- Chain Ac
- 60S ribosomal protein L28
- Chain Ad
- 60S ribosomal protein L29
Coloring options: