J5_6S47_007

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6S47|1|BA|A|541, 6S47|1|BA|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|BA|C|31
6S47|1|BA|U|32
6S47|1|BA|U|33
6S47|1|BA|G|34
6S47|1|BA|U|35
*
6S47|1|BA|A|473
6S47|1|BA|A|474
6S47|1|BA|A|475
6S47|1|BA|U|476
6S47|1|BA|A|477
6S47|1|BA|A|478
6S47|1|BA|C|479
*
6S47|1|BA|G|509
6S47|1|BA|G|510
6S47|1|BA|A|511
6S47|1|BA|A|512
6S47|1|BA|U|513
6S47|1|BA|G|514
6S47|1|BA|A|515
6S47|1|BA|G|516
*
6S47|1|BA|C|536
6S47|1|BA|G|537
6S47|1|BA|A|538
6S47|1|BA|G|539
6S47|1|BA|G|540
6S47|1|BA|A|541
6S47|1|BA|A|542
6S47|1|BA|C|543
6S47|1|BA|A|544
6S47|1|BA|A|545
6S47|1|BA|U|546
*
6S47|1|BA|A|592
6S47|1|BA|U|593
6S47|1|BA|A|594
6S47|1|BA|G|595

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BK

40S ribosomal protein S9-A

Chain BY

40S ribosomal protein S23-A

Chain Bf

40S ribosomal protein S30-A