J5_6S47_009

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6S47|1|BA|U|128, 6S47|1|BA|U|132, 6S47|1|BA|U|133, 6S47|1|BA|U|134, 6S47|1|BA|A|135, 6S47|1|BA|A|140, 6S47|1|BA|U|141, 6S47|1|BA|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|BA|A|124
6S47|1|BA|U|125
6S47|1|BA|A|126
6S47|1|BA|G|127
6S47|1|BA|U|128
6S47|1|BA|U|129
6S47|1|BA|C|130
6S47|1|BA|C|131
6S47|1|BA|U|132
6S47|1|BA|U|133
6S47|1|BA|U|134
6S47|1|BA|A|135
6S47|1|BA|C|136
6S47|1|BA|U|137
6S47|1|BA|A|138
6S47|1|BA|C|139
6S47|1|BA|A|140
6S47|1|BA|U|141
6S47|1|BA|G|142
6S47|1|BA|G|143
*
6S47|1|BA|C|172
6S47|1|BA|A|173
6S47|1|BA|U|174
6S47|1|BA|G|175
6S47|1|BA|C|176
6S47|1|BA|U|177
6S47|1|BA|U|178
6S47|1|BA|A|179
6S47|1|BA|A|180
6S47|1|BA|A|181
6S47|1|BA|A|182
*
6S47|1|BA|U|203
6S47|1|BA|G|204
*
6S47|1|BA|C|263
6S47|1|BA|G|264
6S47|1|BA|A|265
*
6S47|1|BA|U|289
6S47|1|BA|G|290
6S47|1|BA|G|291
6S47|1|BA|U|292
6S47|1|BA|U|293

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BF

40S ribosomal protein S4-A

Chain BH

40S ribosomal protein S6-A

Chain BJ

40S ribosomal protein S8-A