Loop J5_6S47

3D structure

PDB id: 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.28 Å

Loop

Sequence: ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
Length: 46 nucleotides
Bulged bases: 6S47|1|BA|U|639, 6S47|1|BA|U|694, 6S47|1|BA|C|696, 6S47|1|BA|C|697, 6S47|1|BA|U|813, 6S47|1|BA|G|815, 6S47|1|BA|U|820, 6S47|1|BA|A|856
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6S47|1|BA|A|636
6S47|1|BA|C|637
6S47|1|BA|U|638
6S47|1|BA|U|639
6S47|1|BA|U|640
6S47|1|BA|G|641
*
6S47|1|BA|U|693
6S47|1|BA|U|694
6S47|1|BA|U|695
6S47|1|BA|C|696
6S47|1|BA|C|697
6S47|1|BA|U|698
6S47|1|BA|U|699
*
6S47|1|BA|G|739
6S47|1|BA|A|740
6S47|1|BA|C|741
6S47|1|BA|U|742
6S47|1|BA|U|743
6S47|1|BA|U|744
*
6S47|1|BA|A|807
6S47|1|BA|U|808
6S47|1|BA|A|809
6S47|1|BA|G|810
6S47|1|BA|A|811
6S47|1|BA|A|812
6S47|1|BA|U|813
6S47|1|BA|A|814
6S47|1|BA|G|815
6S47|1|BA|G|816
6S47|1|BA|A|817
6S47|1|BA|C|818
6S47|1|BA|G|819
6S47|1|BA|U|820
6S47|1|BA|U|821
6S47|1|BA|U|822
*
6S47|1|BA|A|850
6S47|1|BA|U|851
6S47|1|BA|C|852
6S47|1|BA|G|853
6S47|1|BA|U|854
6S47|1|BA|A|855
6S47|1|BA|A|856
6S47|1|BA|U|857
6S47|1|BA|G|858
6S47|1|BA|A|859
6S47|1|BA|U|860

Current chains

Chain BA: 18S rRNA (1707-MER)

Nearby chains

Chain BF: 40S ribosomal protein S4-A
Chain BI: 40S ribosomal protein S7-A
Chain BM: 40S ribosomal protein S11-A
Chain BO: 40S ribosomal protein S13
Chain BX: 40S ribosomal protein S22-A

J5_6S47_011