J5_6SKG_001

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|30
6SKG|1|Aa|U|31
6SKG|1|Aa|A|32
6SKG|1|Aa|U|33
*
6SKG|1|Aa|A|391
6SKG|1|Aa|G|392
6SKG|1|Aa|U|393
6SKG|1|Aa|G|394
*
6SKG|1|Aa|C|412
6SKG|1|Aa|U|413
6SKG|1|Aa|U|414
6SKG|1|Aa|U|415
6SKG|1|Aa|U|416
6SKG|1|Aa|C|417
*
6SKG|1|Aa|G|437
6SKG|1|Aa|G|438
6SKG|1|Aa|A|439
6SKG|1|Aa|A|440
6SKG|1|Aa|U|441
6SKG|1|Aa|A|442
6SKG|1|Aa|A|443
6SKG|1|Aa|G|444
*
6SKG|1|Aa|C|490
6SKG|1|Aa|G|491
6SKG|1|Aa|A|492
6SKG|1|Aa|G|493

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ae

30S ribosomal protein S4

Chain Ao

30S ribosomal protein S12

Chain Aw

30S ribosomal protein S24e