J5_6SKG_002

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAG*CGGACGGC*GAU*AGG*CG(5MC)AG

Length

23 nucleotides

Bulged bases

6SKG|1|Aa|A|88, 6SKG|1|Aa|5MC|340

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|54
6SKG|1|Aa|G|55
6SKG|1|Aa|A|56
6SKG|1|Aa|G|57
*
6SKG|1|Aa|C|85
6SKG|1|Aa|G|86
6SKG|1|Aa|G|87
6SKG|1|Aa|A|88
6SKG|1|Aa|C|89
6SKG|1|Aa|G|90
6SKG|1|Aa|G|91
6SKG|1|Aa|C|92
*
6SKG|1|Aa|G|302
6SKG|1|Aa|A|303
6SKG|1|Aa|U|304
*
6SKG|1|Aa|A|325
6SKG|1|Aa|G|326
6SKG|1|Aa|G|327
*
6SKG|1|Aa|C|338
6SKG|1|Aa|G|339
6SKG|1|Aa|5MC|340
6SKG|1|Aa|A|341
6SKG|1|Aa|G|342

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Af

30S ribosomal protein S4e

Chain Ah

30S ribosomal protein S6e

Chain Ak

30S ribosomal protein S8e

Chain BL

50S ribosomal protein L14