J5_6SKG_003

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGACGAA(OMG)*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6SKG|1|BA|C|59

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|C|56
6SKG|1|BA|G|57
6SKG|1|BA|A|58
6SKG|1|BA|C|59
6SKG|1|BA|G|60
6SKG|1|BA|A|61
6SKG|1|BA|A|62
6SKG|1|BA|OMG|63
*
6SKG|1|BA|C|124
6SKG|1|BA|G|125
6SKG|1|BA|A|126
6SKG|1|BA|A|127
6SKG|1|BA|U|128
6SKG|1|BA|G|129
*
6SKG|1|BA|C|138
6SKG|1|BA|G|139
*
6SKG|1|BA|C|152
6SKG|1|BA|A|153
6SKG|1|BA|C|154
*
6SKG|1|BA|G|167
6SKG|1|BA|G|168
6SKG|1|BA|G|169

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e

Chain Bo

Nucleic acid-binding protein, containing C2H2 zinc-finger