J5_6SKG_004

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCAAAC*GUGUUGUA*UGAGUAC*GGAAGCUG*CAAC

Length

33 nucleotides

Bulged bases

6SKG|1|BA|U|303, 6SKG|1|BA|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|259
6SKG|1|BA|C|260
6SKG|1|BA|A|261
6SKG|1|BA|A|262
6SKG|1|BA|A|263
6SKG|1|BA|C|264
*
6SKG|1|BA|G|297
6SKG|1|BA|U|298
6SKG|1|BA|G|299
6SKG|1|BA|U|300
6SKG|1|BA|U|301
6SKG|1|BA|G|302
6SKG|1|BA|U|303
6SKG|1|BA|A|304
*
6SKG|1|BA|U|411
6SKG|1|BA|G|412
6SKG|1|BA|A|413
6SKG|1|BA|G|414
6SKG|1|BA|U|415
6SKG|1|BA|A|416
6SKG|1|BA|C|417
*
6SKG|1|BA|G|438
6SKG|1|BA|G|439
6SKG|1|BA|A|440
6SKG|1|BA|A|441
6SKG|1|BA|G|442
6SKG|1|BA|C|443
6SKG|1|BA|U|444
6SKG|1|BA|G|445
*
6SKG|1|BA|C|461
6SKG|1|BA|A|462
6SKG|1|BA|A|463
6SKG|1|BA|C|464

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L7Ae

Chain BP

50S ribosomal protein L15e

Chain Bo

Nucleic acid-binding protein, containing C2H2 zinc-finger