J5_6SKG_005

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGG*CGUC*G(OMG)*CG*CU

Length

13 nucleotides

Bulged bases

6SKG|1|BA|G|569, 6SKG|1|BA|U|653

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|A|568
6SKG|1|BA|G|569
6SKG|1|BA|G|570
*
6SKG|1|BA|C|651
6SKG|1|BA|G|652
6SKG|1|BA|U|653
6SKG|1|BA|C|654
*
6SKG|1|BA|G|669
6SKG|1|BA|OMG|670
*
6SKG|1|BA|C|1396
6SKG|1|BA|G|1397
*
6SKG|1|BA|C|2130
6SKG|1|BA|U|2131

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BV

50S ribosomal protein L22

Chain Bd

50S ribosomal protein L32e

Chain Bf

Ribosomal protein eL35A