J5_6SKG_010

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMC)GAAGACC*(OMG)GA(4SU)AACAG*CCU(5MC)GCUGU*G(5MC)UUAG*CGGAUG

Length

38 nucleotides

Bulged bases

6SKG|1|BA|A|2552, 6SKG|1|BA|U|2714

QA status

Modified nucleotides: OMC, OMG, 4SU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|OMC|2169
6SKG|1|BA|G|2170
6SKG|1|BA|A|2171
6SKG|1|BA|A|2172
6SKG|1|BA|G|2173
6SKG|1|BA|A|2174
6SKG|1|BA|C|2175
6SKG|1|BA|C|2176
*
6SKG|1|BA|OMG|2550
6SKG|1|BA|G|2551
6SKG|1|BA|A|2552
6SKG|1|BA|4SU|2553
6SKG|1|BA|A|2554
6SKG|1|BA|A|2555
6SKG|1|BA|C|2556
6SKG|1|BA|A|2557
6SKG|1|BA|G|2558
*
6SKG|1|BA|C|2602
6SKG|1|BA|C|2603
6SKG|1|BA|U|2604
6SKG|1|BA|5MC|2605
6SKG|1|BA|G|2606
6SKG|1|BA|C|2607
6SKG|1|BA|U|2608
6SKG|1|BA|G|2609
6SKG|1|BA|U|2610
*
6SKG|1|BA|G|2687
6SKG|1|BA|5MC|2688
6SKG|1|BA|U|2689
6SKG|1|BA|U|2690
6SKG|1|BA|A|2691
6SKG|1|BA|G|2692
*
6SKG|1|BA|C|2710
6SKG|1|BA|G|2711
6SKG|1|BA|G|2712
6SKG|1|BA|A|2713
6SKG|1|BA|U|2714
6SKG|1|BA|G|2715

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BD

50S ribosomal protein L3

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15