J5_6SNT_001
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6SNT|1|3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SNT_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0745
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SNT|1|1|A|20
6SNT|1|1|G|21
6SNT|1|1|G|22
*
6SNT|1|3|C|35
6SNT|1|3|G|36
6SNT|1|3|A|37
6SNT|1|3|U|38
6SNT|1|3|G|39
6SNT|1|3|A|40
6SNT|1|3|A|41
6SNT|1|3|G|42
*
6SNT|1|3|U|102
6SNT|1|3|G|103
6SNT|1|3|A|104
6SNT|1|3|A|105
6SNT|1|3|C|106
6SNT|1|3|G|107
*
6SNT|1|3|C|115
6SNT|1|3|G|116
*
6SNT|1|3|C|137
6SNT|1|3|A|138
6SNT|1|3|U|139
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain ae
- 60S ribosomal protein L39
- Chain ag
- 60S ribosomal protein L37-A
- Chain ai
- 60S ribosomal protein L35-A
- Chain as
- 60S ribosomal protein L25
- Chain t
- 60S ribosomal protein L15-A
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