J5_6SNT_002
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6SNT|1|1|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SNT_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0545
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6SNT|1|1|G|658
6SNT|1|1|G|659
6SNT|1|1|A|660
6SNT|1|1|G|661
6SNT|1|1|U|662
6SNT|1|1|C|663
*
6SNT|1|1|G|799
6SNT|1|1|G|800
6SNT|1|1|A|801
6SNT|1|1|C|802
*
6SNT|1|1|G|941
6SNT|1|1|U|942
6SNT|1|1|U|943
6SNT|1|1|C|944
*
6SNT|1|1|G|1375
6SNT|1|1|C|1376
*
6SNT|1|1|G|1431
6SNT|1|1|C|1432
6SNT|1|1|A|1433
6SNT|1|1|G|1434
6SNT|1|1|A|1435
6SNT|1|1|U|1436
6SNT|1|1|C|1437
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain al
- 60S ribosomal protein L32
- Chain ap
- 60S ribosomal protein L28
- Chain j
- 60S ribosomal protein L4-A
- Chain r
- 60S ribosomal protein L13-A
- Chain t
- 60S ribosomal protein L15-A
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