J5_6SNT_004
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6SNT|1|1|G|2116, 6SNT|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SNT_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0859
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SNT|1|1|G|1906
6SNT|1|1|C|1907
6SNT|1|1|A|1908
6SNT|1|1|A|1909
6SNT|1|1|A|1910
6SNT|1|1|A|1911
6SNT|1|1|U|1912
6SNT|1|1|A|1913
6SNT|1|1|G|1914
*
6SNT|1|1|U|1938
6SNT|1|1|G|1939
*
6SNT|1|1|U|2109
6SNT|1|1|G|2110
*
6SNT|1|1|C|2114
6SNT|1|1|G|2115
6SNT|1|1|G|2116
6SNT|1|1|A|2117
6SNT|1|1|C|2118
6SNT|1|1|A|2119
6SNT|1|1|A|2120
6SNT|1|1|G|2121
6SNT|1|1|G|2122
*
6SNT|1|1|C|2331
6SNT|1|1|A|2332
6SNT|1|1|C|2333
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AB
- 60S ribosomal protein L23-A
- Chain at
- 60S ribosomal protein L24-A
- Chain i
- 60S ribosomal protein L3
- Chain x
- 60S ribosomal protein L19-A
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