J5_6SNT_009

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6SNT|1|2|U|128, 6SNT|1|2|C|130, 6SNT|1|2|U|132, 6SNT|1|2|U|134, 6SNT|1|2|A|135, 6SNT|1|2|A|140, 6SNT|1|2|U|141, 6SNT|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|2|A|124
6SNT|1|2|U|125
6SNT|1|2|A|126
6SNT|1|2|G|127
6SNT|1|2|U|128
6SNT|1|2|U|129
6SNT|1|2|C|130
6SNT|1|2|C|131
6SNT|1|2|U|132
6SNT|1|2|U|133
6SNT|1|2|U|134
6SNT|1|2|A|135
6SNT|1|2|C|136
6SNT|1|2|U|137
6SNT|1|2|A|138
6SNT|1|2|C|139
6SNT|1|2|A|140
6SNT|1|2|U|141
6SNT|1|2|G|142
6SNT|1|2|G|143
*
6SNT|1|2|C|172
6SNT|1|2|A|173
6SNT|1|2|U|174
6SNT|1|2|G|175
6SNT|1|2|C|176
6SNT|1|2|U|177
6SNT|1|2|U|178
6SNT|1|2|A|179
6SNT|1|2|A|180
6SNT|1|2|A|181
6SNT|1|2|A|182
*
6SNT|1|2|U|203
6SNT|1|2|G|204
*
6SNT|1|2|C|263
6SNT|1|2|G|264
6SNT|1|2|A|265
*
6SNT|1|2|U|289
6SNT|1|2|G|290
6SNT|1|2|G|291
6SNT|1|2|U|292
6SNT|1|2|U|293

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A