J5_6SNT_011

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

6SNT|1|2|U|639, 6SNT|1|2|U|694, 6SNT|1|2|C|696, 6SNT|1|2|C|697, 6SNT|1|2|U|813, 6SNT|1|2|G|815, 6SNT|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|2|A|636
6SNT|1|2|C|637
6SNT|1|2|U|638
6SNT|1|2|U|639
6SNT|1|2|U|640
6SNT|1|2|G|641
*
6SNT|1|2|U|693
6SNT|1|2|U|694
6SNT|1|2|U|695
6SNT|1|2|C|696
6SNT|1|2|C|697
6SNT|1|2|U|698
6SNT|1|2|U|699
*
6SNT|1|2|G|739
6SNT|1|2|A|740
6SNT|1|2|C|741
6SNT|1|2|U|742
6SNT|1|2|U|743
6SNT|1|2|U|744
*
6SNT|1|2|A|807
6SNT|1|2|U|808
6SNT|1|2|A|809
6SNT|1|2|G|810
6SNT|1|2|A|811
6SNT|1|2|A|812
6SNT|1|2|U|813
6SNT|1|2|A|814
6SNT|1|2|G|815
6SNT|1|2|G|816
6SNT|1|2|A|817
*
6SNT|1|2|U|854
6SNT|1|2|A|855
6SNT|1|2|A|856
6SNT|1|2|U|857
6SNT|1|2|G|858
6SNT|1|2|A|859
6SNT|1|2|U|860

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S7-A

Chain L

40S ribosomal protein S11-A

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A

Chain x

60S ribosomal protein L19-A