J5_6SPB_001

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6SPB|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6SPB_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.069

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SPB|1|A|C|47
6SPB|1|A|G|48
6SPB|1|A|A|49
6SPB|1|A|U|50
6SPB|1|A|G|51
6SPB|1|A|A|52
6SPB|1|A|A|53
6SPB|1|A|A|54
*
6SPB|1|A|U|116
6SPB|1|A|G|117
6SPB|1|A|A|118
6SPB|1|A|A|119
6SPB|1|A|U|120
6SPB|1|A|G|121
*
6SPB|1|A|C|130
6SPB|1|A|A|131
*
6SPB|1|A|U|148
6SPB|1|A|A|149
6SPB|1|A|U|150
*
6SPB|1|A|A|176
6SPB|1|A|G|177
6SPB|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34