J5_6SPB_005

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

6SPB|1|A|A|2049, 6SPB|1|A|A|2435, 6SPB|1|A|U|2596, 6SPB|1|A|C|2597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPB|1|A|G|2044
6SPB|1|A|A|2045
6SPB|1|A|A|2046
6SPB|1|A|A|2047
6SPB|1|A|G|2048
6SPB|1|A|A|2049
6SPB|1|A|C|2050
6SPB|1|A|C|2051
*
6SPB|1|A|G|2433
6SPB|1|A|G|2434
6SPB|1|A|A|2435
6SPB|1|A|U|2436
6SPB|1|A|A|2437
6SPB|1|A|A|2438
6SPB|1|A|C|2439
6SPB|1|A|A|2440
*
6SPB|1|A|U|2487
6SPB|1|A|C|2488
6SPB|1|A|G|2489
6SPB|1|A|A|2490
6SPB|1|A|U|2491
6SPB|1|A|G|2492
6SPB|1|A|U|2493
*
6SPB|1|A|G|2570
6SPB|1|A|U|2571
6SPB|1|A|U|2572
6SPB|1|A|U|2573
6SPB|1|A|A|2574
6SPB|1|A|G|2575
*
6SPB|1|A|C|2593
6SPB|1|A|G|2594
6SPB|1|A|G|2595
6SPB|1|A|U|2596
6SPB|1|A|C|2597
6SPB|1|A|C|2598

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain S

50S ribosomal protein L22